WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y80D3A.2a.1 Sequence Name  Y80D3A.2a.1
Length (nt)  4875   Chromosome Location  V: 18860285-18894974
Chromosome . Primary Identifier  V Chromosome Location . Start  18860285
Chromosome Location . End  18894974 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y80D3A.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001258 emb-4 Y80D3A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y80D3A.2a Y80D3A.2a 4404   V: 18860750-18860898

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y80D3A.2a.1 18860285 18894974 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon216862   614   V: 18860285-18860898 Caenorhabditis elegans
Exon216866   178   V: 18861692-18861869 Caenorhabditis elegans
Exon216868   303   V: 18864883-18865185 Caenorhabditis elegans
Exon216872   171   V: 18867290-18867460 Caenorhabditis elegans
Exon216873   96   V: 18868111-18868206 Caenorhabditis elegans
Exon216875   76   V: 18870906-18870981 Caenorhabditis elegans
Exon216876   341   V: 18872626-18872966 Caenorhabditis elegans
Exon216879   132   V: 18877016-18877147 Caenorhabditis elegans
Exon216880   129   V: 18877193-18877321 Caenorhabditis elegans
Exon216881   479   V: 18879047-18879525 Caenorhabditis elegans
Exon216882   378   V: 18881551-18881928 Caenorhabditis elegans
Exon216883   236   V: 18884423-18884658 Caenorhabditis elegans
Exon216884   271   V: 18885847-18886117 Caenorhabditis elegans
Exon216885   279   V: 18886731-18887009 Caenorhabditis elegans
Exon216887   225   V: 18889773-18889997 Caenorhabditis elegans
Exon216888   249   V: 18892425-18892673 Caenorhabditis elegans
Exon216889   308   V: 18893450-18893757 Caenorhabditis elegans
Exon216890   335   V: 18894496-18894830 Caenorhabditis elegans
Exon216891   75   V: 18894900-18894974 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y80D3A.2a.1 18860285 18894974 -1

1 Sequence

Length
4875

1 Sequence Ontology Term

Identifier Name Description
transcript