WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y80D3A.7a.1 Sequence Name  Y80D3A.7a.1
Length (nt)  2772   Chromosome Location  V: 18919221-18931379
Chromosome . Primary Identifier  V Chromosome Location . Start  18919221
Chromosome Location . End  18931379 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y80D3A.7a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004236 ptr-22 Y80D3A.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y80D3A.7a Y80D3A.7a 2667   V: 18919319-18919460

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y80D3A.7a.1 18919221 18931379 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon216910   240   V: 18919221-18919460 Caenorhabditis elegans
Exon216912   95   V: 18919512-18919606 Caenorhabditis elegans
Exon216914   132   V: 18921190-18921321 Caenorhabditis elegans
Exon216916   340   V: 18922114-18922453 Caenorhabditis elegans
Exon216921   628   V: 18923679-18924306 Caenorhabditis elegans
Exon216923   190   V: 18925304-18925493 Caenorhabditis elegans
Exon216925   328   V: 18926347-18926674 Caenorhabditis elegans
Exon216928   338   V: 18927752-18928089 Caenorhabditis elegans
Exon216929   216   V: 18929263-18929478 Caenorhabditis elegans
Exon216930   108   V: 18930926-18931033 Caenorhabditis elegans
Exon216931   157   V: 18931223-18931379 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y80D3A.7a.1 18919221 18931379 -1

1 Sequence

Length
2772

1 Sequence Ontology Term

Identifier Name Description
transcript