WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39B6A.29a.1 Sequence Name  Y39B6A.29a.1
Length (nt)  1399   Chromosome Location  V: 19020480-19024783
Chromosome . Primary Identifier  V Chromosome Location . Start  19020480
Chromosome Location . End  19024783 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39B6A.29a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012688 Y39B6A.29 Y39B6A.29 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39B6A.29a Y39B6A.29a 1362   V: 19020499-19020648

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39B6A.29a.1 19020480 19024783 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon217127   169   V: 19020480-19020648 Caenorhabditis elegans
Exon217129   136   V: 19020699-19020834 Caenorhabditis elegans
Exon217131   172   V: 19021552-19021723 Caenorhabditis elegans
Exon217133   189   V: 19022197-19022385 Caenorhabditis elegans
Exon217135   131   V: 19022648-19022778 Caenorhabditis elegans
Exon217137   129   V: 19022991-19023119 Caenorhabditis elegans
Exon217139   97   V: 19023167-19023263 Caenorhabditis elegans
Exon217141   188   V: 19023777-19023964 Caenorhabditis elegans
Exon217142   80   V: 19024031-19024110 Caenorhabditis elegans
Exon217144   108   V: 19024676-19024783 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39B6A.29a.1 19020480 19024783 -1

1 Sequence

Length
1399

1 Sequence Ontology Term

Identifier Name Description
transcript