WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y43F8B.3e.1 Sequence Name  Y43F8B.3e.1
Length (nt)  3376   Chromosome Location  V: 19503108-19519726
Chromosome . Primary Identifier  V Chromosome Location . Start  19503108
Chromosome Location . End  19519726 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y43F8B.3e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012814 Y43F8B.3 Y43F8B.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y43F8B.3e Y43F8B.3e 3372   V: 19503112-19503304

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y43F8B.3e.1 19503108 19519726 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon217900   197   V: 19503108-19503304 Caenorhabditis elegans
Exon217910   82   V: 19503754-19503835 Caenorhabditis elegans
Exon217918   107   V: 19503998-19504104 Caenorhabditis elegans
Exon217931   193   V: 19506371-19506563 Caenorhabditis elegans
Exon217939   110   V: 19507286-19507395 Caenorhabditis elegans
Exon217947   144   V: 19507691-19507834 Caenorhabditis elegans
Exon217955   688   V: 19508974-19509661 Caenorhabditis elegans
Exon217962   254   V: 19510027-19510280 Caenorhabditis elegans
Exon217981   312   V: 19513942-19514253 Caenorhabditis elegans
Exon217988   168   V: 19514355-19514522 Caenorhabditis elegans
Exon218011   138   V: 19515764-19515901 Caenorhabditis elegans
Exon218019   716   V: 19516052-19516767 Caenorhabditis elegans
Exon218027   85   V: 19516824-19516908 Caenorhabditis elegans
Exon218044   77   V: 19519080-19519156 Caenorhabditis elegans
Exon218048   105   V: 19519622-19519726 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y43F8B.3e.1 19503108 19519726 1

1 Sequence

Length
3376

1 Sequence Ontology Term

Identifier Name Description
transcript