WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y43F8B.3c.1 Sequence Name  Y43F8B.3c.1
Length (nt)  4500   Chromosome Location  V: 19503101-19520015
Chromosome . Primary Identifier  V Chromosome Location . Start  19503101
Chromosome Location . End  19520015 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y43F8B.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012814 Y43F8B.3 Y43F8B.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y43F8B.3c Y43F8B.3c 4200   V: 19503112-19503304

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y43F8B.3c.1 19503101 19520015 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon217878   204   V: 19503101-19503304 Caenorhabditis elegans
Exon217888   82   V: 19503754-19503835 Caenorhabditis elegans
Exon217896   107   V: 19503998-19504104 Caenorhabditis elegans
Exon217905   165   V: 19505895-19506059 Caenorhabditis elegans
Exon217909   193   V: 19506371-19506563 Caenorhabditis elegans
Exon217917   110   V: 19507286-19507395 Caenorhabditis elegans
Exon217925   144   V: 19507691-19507834 Caenorhabditis elegans
Exon217933   688   V: 19508974-19509661 Caenorhabditis elegans
Exon217940   254   V: 19510027-19510280 Caenorhabditis elegans
Exon217959   312   V: 19513942-19514253 Caenorhabditis elegans
Exon217966   168   V: 19514355-19514522 Caenorhabditis elegans
Exon217972   150   V: 19514626-19514775 Caenorhabditis elegans
Exon217977   174   V: 19514861-19515034 Caenorhabditis elegans
Exon217982   339   V: 19515205-19515543 Caenorhabditis elegans
Exon217989   138   V: 19515764-19515901 Caenorhabditis elegans
Exon217997   716   V: 19516052-19516767 Caenorhabditis elegans
Exon218005   85   V: 19516824-19516908 Caenorhabditis elegans
Exon218023   77   V: 19519080-19519156 Caenorhabditis elegans
Exon218033   394   V: 19519622-19520015 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y43F8B.3c.1 19503101 19520015 1

1 Sequence

Length
4500

1 Sequence Ontology Term

Identifier Name Description
transcript