WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y43F8B.3f.1 Sequence Name  Y43F8B.3f.1
Length (nt)  4231   Chromosome Location  V: 19503106-19519916
Chromosome . Primary Identifier  V Chromosome Location . Start  19503106
Chromosome Location . End  19519916 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y43F8B.3f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012814 Y43F8B.3 Y43F8B.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y43F8B.3f Y43F8B.3f 4035   V: 19503112-19503304

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y43F8B.3f.1 19503106 19519916 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon217879   199   V: 19503106-19503304 Caenorhabditis elegans
Exon217891   82   V: 19503754-19503835 Caenorhabditis elegans
Exon217899   107   V: 19503998-19504104 Caenorhabditis elegans
Exon217912   193   V: 19506371-19506563 Caenorhabditis elegans
Exon217920   110   V: 19507286-19507395 Caenorhabditis elegans
Exon217928   144   V: 19507691-19507834 Caenorhabditis elegans
Exon217936   688   V: 19508974-19509661 Caenorhabditis elegans
Exon217943   254   V: 19510027-19510280 Caenorhabditis elegans
Exon217962   312   V: 19513942-19514253 Caenorhabditis elegans
Exon217969   168   V: 19514355-19514522 Caenorhabditis elegans
Exon217974   150   V: 19514626-19514775 Caenorhabditis elegans
Exon217979   174   V: 19514861-19515034 Caenorhabditis elegans
Exon217984   339   V: 19515205-19515543 Caenorhabditis elegans
Exon217992   138   V: 19515764-19515901 Caenorhabditis elegans
Exon218000   716   V: 19516052-19516767 Caenorhabditis elegans
Exon218008   85   V: 19516824-19516908 Caenorhabditis elegans
Exon218025   77   V: 19519080-19519156 Caenorhabditis elegans
Exon218030   295   V: 19519622-19519916 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y43F8B.3f.1 19503106 19519916 1

1 Sequence

Length
4231

1 Sequence Ontology Term

Identifier Name Description
transcript