WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y43F8B.3a.1 Sequence Name  Y43F8B.3a.1
Length (nt)  3820   Chromosome Location  V: 19503108-19520005
Chromosome . Primary Identifier  V Chromosome Location . Start  19503108
Chromosome Location . End  19520005 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y43F8B.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012814 Y43F8B.3 Y43F8B.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y43F8B.3a Y43F8B.3a 3537   V: 19503112-19503304

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y43F8B.3a.1 19503108 19520005 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon217936   197   V: 19503108-19503304 Caenorhabditis elegans
Exon217940   82   V: 19503754-19503835 Caenorhabditis elegans
Exon217948   107   V: 19503998-19504104 Caenorhabditis elegans
Exon217957   165   V: 19505895-19506059 Caenorhabditis elegans
Exon217961   193   V: 19506371-19506563 Caenorhabditis elegans
Exon217969   110   V: 19507286-19507395 Caenorhabditis elegans
Exon217977   144   V: 19507691-19507834 Caenorhabditis elegans
Exon217985   688   V: 19508974-19509661 Caenorhabditis elegans
Exon217992   254   V: 19510027-19510280 Caenorhabditis elegans
Exon218011   312   V: 19513942-19514253 Caenorhabditis elegans
Exon218018   168   V: 19514355-19514522 Caenorhabditis elegans
Exon218041   138   V: 19515764-19515901 Caenorhabditis elegans
Exon218049   716   V: 19516052-19516767 Caenorhabditis elegans
Exon218057   85   V: 19516824-19516908 Caenorhabditis elegans
Exon218076   77   V: 19519080-19519156 Caenorhabditis elegans
Exon218086   384   V: 19519622-19520005 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y43F8B.3a.1 19503108 19520005 1

1 Sequence

Length
3820

1 Sequence Ontology Term

Identifier Name Description
transcript