WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y43F8B.1e.1 Sequence Name  Y43F8B.1e.1
Length (nt)  2096   Chromosome Location  V: 19535111-19546200
Chromosome . Primary Identifier  V Chromosome Location . Start  19535111
Chromosome Location . End  19546200 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y43F8B.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012812 Y43F8B.1 Y43F8B.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y43F8B.1e Y43F8B.1e 2064   V: 19535111-19535155

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y43F8B.1e.1 19535111 19546200 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon218068   45   V: 19535111-19535155 Caenorhabditis elegans
Exon218076   21   V: 19535883-19535903 Caenorhabditis elegans
Exon218085   47   V: 19535956-19536002 Caenorhabditis elegans
Exon218094   141   V: 19537043-19537183 Caenorhabditis elegans
Exon218103   100   V: 19537435-19537534 Caenorhabditis elegans
Exon218112   52   V: 19537582-19537633 Caenorhabditis elegans
Exon218121   215   V: 19538970-19539184 Caenorhabditis elegans
Exon218130   102   V: 19539241-19539342 Caenorhabditis elegans
Exon218140   123   V: 19543260-19543382 Caenorhabditis elegans
Exon218147   132   V: 19543944-19544075 Caenorhabditis elegans
Exon218154   911   V: 19544534-19545444 Caenorhabditis elegans
Exon218160   112   V: 19545493-19545604 Caenorhabditis elegans
Exon218164   50   V: 19545654-19545703 Caenorhabditis elegans
Exon218171   45   V: 19546156-19546200 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y43F8B.1e.1 19535111 19546200 -1

1 Sequence

Length
2096

1 Sequence Ontology Term

Identifier Name Description
transcript