WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y43F8B.1a.1 Sequence Name  Y43F8B.1a.1
Length (nt)  1306   Chromosome Location  V: 19534898-19544075
Chromosome . Primary Identifier  V Chromosome Location . Start  19534898
Chromosome Location . End  19544075 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y43F8B.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012812 Y43F8B.1 Y43F8B.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y43F8B.1a Y43F8B.1a 930   V: 19535847-19535903

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y43F8B.1a.1 19534898 19544075 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon218119   258   V: 19534898-19535155 Caenorhabditis elegans
Exon218123   136   V: 19535768-19535903 Caenorhabditis elegans
Exon218131   47   V: 19535956-19536002 Caenorhabditis elegans
Exon218140   141   V: 19537043-19537183 Caenorhabditis elegans
Exon218149   100   V: 19537435-19537534 Caenorhabditis elegans
Exon218158   52   V: 19537582-19537633 Caenorhabditis elegans
Exon218167   215   V: 19538970-19539184 Caenorhabditis elegans
Exon218176   102   V: 19539241-19539342 Caenorhabditis elegans
Exon218187   123   V: 19543260-19543382 Caenorhabditis elegans
Exon218195   132   V: 19543944-19544075 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y43F8B.1a.1 19534898 19544075 -1

1 Sequence

Length
1306

1 Sequence Ontology Term

Identifier Name Description
transcript