WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y43F8B.1d.1 Sequence Name  Y43F8B.1d.1
Length (nt)  2136   Chromosome Location  V: 19535111-19546168
Chromosome . Primary Identifier  V Chromosome Location . Start  19535111
Chromosome Location . End  19546168 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y43F8B.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012812 Y43F8B.1 Y43F8B.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y43F8B.1d Y43F8B.1d 2136   V: 19535111-19535155

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y43F8B.1d.1 19535111 19546168 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon218121   45   V: 19535111-19535155 Caenorhabditis elegans
Exon218129   21   V: 19535883-19535903 Caenorhabditis elegans
Exon218138   47   V: 19535956-19536002 Caenorhabditis elegans
Exon218147   141   V: 19537043-19537183 Caenorhabditis elegans
Exon218156   100   V: 19537435-19537534 Caenorhabditis elegans
Exon218165   52   V: 19537582-19537633 Caenorhabditis elegans
Exon218174   215   V: 19538970-19539184 Caenorhabditis elegans
Exon218183   102   V: 19539241-19539342 Caenorhabditis elegans
Exon218193   123   V: 19543260-19543382 Caenorhabditis elegans
Exon218200   132   V: 19543944-19544075 Caenorhabditis elegans
Exon218207   911   V: 19544534-19545444 Caenorhabditis elegans
Exon218213   112   V: 19545493-19545604 Caenorhabditis elegans
Exon218220   122   V: 19545654-19545775 Caenorhabditis elegans
Exon218221   13   V: 19546156-19546168 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y43F8B.1d.1 19535111 19546168 -1

1 Sequence

Length
2136

1 Sequence Ontology Term

Identifier Name Description
transcript