WormMine: Gene WBGene00189946

• WormBase Gene ID: WBGene00189946
• Gene Name: W04E12.10
• Sequence Name: W04E12.10
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by clk-1; hlh-26; and mip-1 based on microarray and RNA-seq studies. Is affected by paraquat based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 383

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00189946

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

40 Allele

• gk963271
• gk962705
• gk963489
• gk963304
• WBVar02124642
• gk963809
• gk963637
• WBVar02063172
• WBVar02120873
• WBVar02122473
• WBVar02121489
• WBVar02123635
• WBVar02124915
• WBVar02121909
• WBVar02120728
• WBVar02121052
• WBVar02122975
• WBVar02122403
• WBVar01978255
• WBVar02025925
• WBVar02025926
• WBVar01940972
• WBVar01940971
• WBVar01945081
• WBVar02085731
• WBVar02105467
• gk265414
• WBVar01524448
• WBVar01524446
• WBVar02111449

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00189946
• Start: 19742492
• End: 19742874
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_19742875..19743604
• Length (nt): 730
• Chromosome Location: V: 19742875-19743604
• Organism: Caenorhabditis elegans

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in N2 animals exposed to 0.1mM Paraquat from hatching to reaching adult stage.	DESeq2 version 1.22.2, p < 0.05	WBPaper00064716:paraquat_downregulated
	Transcripts that showed significantly decreased expression in dissected female germline comparing to in dissected male germline.	Log2 Fold change > 2 or <-1, p-value < 0.05.	WBPaper00053599:female_vs_male_downregulated
	Down-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2.	Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off.	WBPaper00045774:clk-1_downregulated
Bacteria: B.subtilis	Transcripts that showed significantly increased expression when animals were fed by probiotic bacteria strain B.subtilis PXN21 comparing to animals fed with OP50 from L1 till day 1 adult.	edgeR 3.16.5, FDR < 0.05, fold change > 2.	WBPaper00059117:B.subtilis_upregulated
	Transcripts that showed significantly increased expression in hlh-26(ok1453) animals exposed to E. faecium for 8 hours, comparing to N2 animals exposed to E. faecium for 8 hours.	Fold change > 2.	WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
	Transcripts that showed significantly increased expression in mip-1(how5) comparing to in control animals.	DESeq2, fold change > 2.	WBPaper00066038:mip-1(how5)_upregulated
	Genes that were enriched in spermatogenic fem-3(q96gf) gonads comparing to in oogenic fog-2(q71), according to RNAseq analysis.	To identify differentially expressed transcripts, authors used R/Bioconductor package DESeq.	WBPaper00045521:Spermatogenic

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00189946
• Start: 19742492
• End: 19742874
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 383

1 Sequence Ontology Term