WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y116F11B.2.1 Sequence Name  Y116F11B.2.1
Length (nt)  1275   Chromosome Location  V: 19797936-19801133
Chromosome . Primary Identifier  V Chromosome Location . Start  19797936
Chromosome Location . End  19801133 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y116F11B.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013820 Y116F11B.2 Y116F11B.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y116F11B.2 Y116F11B.2 1212   V: 19797999-19798176

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y116F11B.2.1 19797936 19801133 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon218540   241   V: 19797936-19798176 Caenorhabditis elegans
Exon218541   130   V: 19798226-19798355 Caenorhabditis elegans
Exon218542   185   V: 19798401-19798585 Caenorhabditis elegans
Exon218543   139   V: 19798635-19798773 Caenorhabditis elegans
Exon218545   209   V: 19799037-19799245 Caenorhabditis elegans
Exon218546   133   V: 19799828-19799960 Caenorhabditis elegans
Exon218547   66   V: 19800008-19800073 Caenorhabditis elegans
Exon218548   48   V: 19800867-19800914 Caenorhabditis elegans
Exon218549   39   V: 19800960-19800998 Caenorhabditis elegans
Exon218550   85   V: 19801049-19801133 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y116F11B.2.1 19797936 19801133 -1

1 Sequence

Length
1275

1 Sequence Ontology Term

Identifier Name Description
transcript