WormMine: Gene WBGene00013821

• WormBase Gene ID: WBGene00013821
• Gene Name: srz-35
• Sequence Name: Y116F11B.4
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by adr-1; qui-1; and mrps-5 based on RNA-seq and microarray studies.
• Biotype: SO:0000336
• Genetic Position: V :23.6688 ±0.03503
• Length (nt): 2070

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00013821

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

57 Allele

• gk963271
• gk964176
• gk962705
• gk963489
• gk963304
• WBVar02124642
• gk963809
• gk963637
• gk962663
• gk962717
• gk962911
• gk964374
• WBVar02124285
• gk962675
• WBVar01710500
• WBVar01654757
• WBVar01654758
• WBVar02120729
• WBVar02120875
• WBVar02123722
• WBVar02123321
• WBVar02078859
• WBVar01598445
• WBVar01877030
• WBVar01877032
• WBVar01877031
• WBVar01877034
• WBVar01877033
• WBVar01877021
• WBVar01877020

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00013821
• Start: 19839403
• End: 19841472
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_19839343..19839402
• Length (nt): 60
• Chromosome Location: V: 19839343-19839402
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Coexpression clique No. 203, sre-33-ZK1025.1_8337, on the genome-wide coexpression clique map for the nematode GPL200 platform.	All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.	WBPaper00061527:sre-33-ZK1025.1_8337
	Transcripts that showed significantly decreased expression in ADL neurons of qui-1(db104) comparing to in N2 at day 1 adult stage.	tximport 1.14.2 and DEseq2 1.26.0. Fold change > 2, FDR < 0.05.	WBPaper00062520:qui-1(db104)_downregulated
	Transcripts that showed significantly increased expression in mrps-5(RNAi) comparing to in control animals.	Fold change > 4, p-value < 0.01	WBPaper00056330:mrps-5(RNAi)_upregulated
	Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2.	DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5.	WBPaper00055226:adr-1(tm668)_downregulated
	Coexpression clique No. 282, srj-21-srh-32, on the genome-wide coexpression clique map for the nematode GPL200 platform.	All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.	WBPaper00061527:srj-21-srh-32

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00013821
• Start: 19839403
• End: 19841472
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 2070

1 Sequence Ontology Term