WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y116F11B.12a.1 Sequence Name  Y116F11B.12a.1
Length (nt)  2189   Chromosome Location  V: 19881374-19895350
Chromosome . Primary Identifier  V Chromosome Location . Start  19881374
Chromosome Location . End  19895350 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y116F11B.12a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001629 gly-4 Y116F11B.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y116F11B.12a Y116F11B.12a 1770   V: 19881656-19881751

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y116F11B.12a.1 19881374 19895350 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon218659   378   V: 19881374-19881751 Caenorhabditis elegans
Exon218660   75   V: 19882447-19882521 Caenorhabditis elegans
Exon218663   241   V: 19882807-19883047 Caenorhabditis elegans
Exon218670   84   V: 19887180-19887263 Caenorhabditis elegans
Exon218674   93   V: 19887408-19887500 Caenorhabditis elegans
Exon218678   319   V: 19888337-19888655 Caenorhabditis elegans
Exon218682   532   V: 19890464-19890995 Caenorhabditis elegans
Exon218686   222   V: 19892170-19892391 Caenorhabditis elegans
Exon218692   113   V: 19892555-19892667 Caenorhabditis elegans
Exon218694   132   V: 19895219-19895350 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y116F11B.12a.1 19881374 19895350 -1

1 Sequence

Length
2189

1 Sequence Ontology Term

Identifier Name Description
transcript