WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y60A3A.12.1 Sequence Name  Y60A3A.12.1
Length (nt)  2532   Chromosome Location  V: 19908086-19916023
Chromosome . Primary Identifier  V Chromosome Location . Start  19908086
Chromosome Location . End  19916023 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y60A3A.12.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000499 chk-2 Y60A3A.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y60A3A.12 Y60A3A.12 1431   V: 19909137-19909148

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y60A3A.12.1 19908086 19916023 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon218777   1063   V: 19908086-19909148 Caenorhabditis elegans
Exon218779   159   V: 19909844-19910002 Caenorhabditis elegans
Exon218780   80   V: 19910588-19910667 Caenorhabditis elegans
Exon218781   98   V: 19910909-19911006 Caenorhabditis elegans
Exon218782   125   V: 19913755-19913879 Caenorhabditis elegans
Exon218783   87   V: 19913957-19914043 Caenorhabditis elegans
Exon218784   57   V: 19914093-19914149 Caenorhabditis elegans
Exon218785   120   V: 19914203-19914322 Caenorhabditis elegans
Exon218786   108   V: 19914674-19914781 Caenorhabditis elegans
Exon218787   137   V: 19915131-19915267 Caenorhabditis elegans
Exon218788   139   V: 19915374-19915512 Caenorhabditis elegans
Exon218789   131   V: 19915556-19915686 Caenorhabditis elegans
Exon218790   137   V: 19915743-19915879 Caenorhabditis elegans
Exon218791   91   V: 19915933-19916023 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y60A3A.12.1 19908086 19916023 -1

1 Sequence

Length
2532

1 Sequence Ontology Term

Identifier Name Description
transcript