WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y113G7A.5.1 Sequence Name  Y113G7A.5.1
Length (nt)  1745   Chromosome Location  V: 20023046-20036657
Chromosome . Primary Identifier  V Chromosome Location . Start  20023046
Chromosome Location . End  20036657 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y113G7A.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013746 lgc-55 Y113G7A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y113G7A.5 Y113G7A.5 1617   V: 20023077-20023134

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y113G7A.5.1 20023046 20036657 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon218941   89   V: 20023046-20023134 Caenorhabditis elegans
Exon218942   111   V: 20026842-20026952 Caenorhabditis elegans
Exon218943   100   V: 20027234-20027333 Caenorhabditis elegans
Exon218944   178   V: 20029004-20029181 Caenorhabditis elegans
Exon218945   279   V: 20029258-20029536 Caenorhabditis elegans
Exon218946   132   V: 20030401-20030532 Caenorhabditis elegans
Exon218947   201   V: 20031557-20031757 Caenorhabditis elegans
Exon218949   113   V: 20032866-20032978 Caenorhabditis elegans
Exon218950   94   V: 20033109-20033202 Caenorhabditis elegans
Exon218951   165   V: 20033884-20034048 Caenorhabditis elegans
Exon218952   101   V: 20035219-20035319 Caenorhabditis elegans
Exon218953   182   V: 20036476-20036657 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y113G7A.5.1 20023046 20036657 1

1 Sequence

Length
1745

1 Sequence Ontology Term

Identifier Name Description
transcript