WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y113G7A.8a.1 Sequence Name  Y113G7A.8a.1
Length (nt)  1877   Chromosome Location  V: 20075916-20087733
Chromosome . Primary Identifier  V Chromosome Location . Start  20075916
Chromosome Location . End  20087733 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y113G7A.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001485 fre-1 Y113G7A.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y113G7A.8a Y113G7A.8a 1758   V: 20076025-20076161

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y113G7A.8a.1 20075916 20087733 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon218947   246   V: 20075916-20076161 Caenorhabditis elegans
Exon218949   197   V: 20079852-20080048 Caenorhabditis elegans
Exon218951   122   V: 20080198-20080319 Caenorhabditis elegans
Exon218953   176   V: 20080503-20080678 Caenorhabditis elegans
Exon218955   237   V: 20082073-20082309 Caenorhabditis elegans
Exon218957   164   V: 20083097-20083260 Caenorhabditis elegans
Exon218959   133   V: 20083324-20083456 Caenorhabditis elegans
Exon218962   334   V: 20085272-20085605 Caenorhabditis elegans
Exon218964   129   V: 20085766-20085894 Caenorhabditis elegans
Exon218966   139   V: 20087595-20087733 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y113G7A.8a.1 20075916 20087733 -1

1 Sequence

Length
1877

1 Sequence Ontology Term

Identifier Name Description
transcript