WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y113G7A.8b.1 Sequence Name  Y113G7A.8b.1
Length (nt)  1886   Chromosome Location  V: 20075918-20087735
Chromosome . Primary Identifier  V Chromosome Location . Start  20075918
Chromosome Location . End  20087735 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y113G7A.8b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001485 fre-1 Y113G7A.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y113G7A.8b Y113G7A.8b 1767   V: 20076025-20076161

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y113G7A.8b.1 20075918 20087735 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon219002   244   V: 20075918-20076161 Caenorhabditis elegans
Exon219004   197   V: 20079852-20080048 Caenorhabditis elegans
Exon219006   122   V: 20080198-20080319 Caenorhabditis elegans
Exon219008   176   V: 20080503-20080678 Caenorhabditis elegans
Exon219010   246   V: 20082073-20082318 Caenorhabditis elegans
Exon219012   164   V: 20083097-20083260 Caenorhabditis elegans
Exon219014   133   V: 20083324-20083456 Caenorhabditis elegans
Exon219017   334   V: 20085272-20085605 Caenorhabditis elegans
Exon219019   129   V: 20085766-20085894 Caenorhabditis elegans
Exon219021   141   V: 20087595-20087735 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y113G7A.8b.1 20075918 20087735 -1

1 Sequence

Length
1886

1 Sequence Ontology Term

Identifier Name Description
transcript