WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y113G7A.3.1 Sequence Name  Y113G7A.3.1
Length (nt)  2591   Chromosome Location  V: 20091263-20105685
Chromosome . Primary Identifier  V Chromosome Location . Start  20091263
Chromosome Location . End  20105685 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y113G7A.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004754 sec-23 Y113G7A.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y113G7A.3 Y113G7A.3 2466   V: 20091268-20091405

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y113G7A.3.1 20091263 20105685 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon218976   143   V: 20091263-20091405 Caenorhabditis elegans
Exon218977   95   V: 20092158-20092252 Caenorhabditis elegans
Exon218978   145   V: 20092308-20092452 Caenorhabditis elegans
Exon218979   90   V: 20092502-20092591 Caenorhabditis elegans
Exon218980   114   V: 20092866-20092979 Caenorhabditis elegans
Exon218984   145   V: 20097249-20097393 Caenorhabditis elegans
Exon218985   272   V: 20098676-20098947 Caenorhabditis elegans
Exon218987   592   V: 20100114-20100705 Caenorhabditis elegans
Exon218988   242   V: 20101016-20101257 Caenorhabditis elegans
Exon218990   227   V: 20103207-20103433 Caenorhabditis elegans
Exon218991   316   V: 20103969-20104284 Caenorhabditis elegans
Exon218992   210   V: 20105476-20105685 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y113G7A.3.1 20091263 20105685 1

1 Sequence

Length
2591

1 Sequence Ontology Term

Identifier Name Description
transcript