WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53H2.1b.1 Sequence Name  F53H2.1b.1
Length (nt)  2271   Chromosome Location  V: 20389539-20393367
Chromosome . Primary Identifier  V Chromosome Location . Start  20389539
Chromosome Location . End  20393367 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53H2.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010004 F53H2.1 F53H2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53H2.1b F53H2.1b 2271   V: 20389539-20389693

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F53H2.1b.1 20389539 20393367 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon219452   155   V: 20389539-20389693 Caenorhabditis elegans
Exon219454   154   V: 20389736-20389889 Caenorhabditis elegans
Exon219456   116   V: 20389940-20390055 Caenorhabditis elegans
Exon219458   37   V: 20390098-20390134 Caenorhabditis elegans
Exon219460   62   V: 20390180-20390241 Caenorhabditis elegans
Exon219462   85   V: 20390433-20390517 Caenorhabditis elegans
Exon219464   150   V: 20390563-20390712 Caenorhabditis elegans
Exon219466   65   V: 20390762-20390826 Caenorhabditis elegans
Exon219468   82   V: 20390903-20390984 Caenorhabditis elegans
Exon219470   80   V: 20391033-20391112 Caenorhabditis elegans
Exon219472   117   V: 20391253-20391369 Caenorhabditis elegans
Exon219474   290   V: 20391455-20391744 Caenorhabditis elegans
Exon219477   80   V: 20391793-20391872 Caenorhabditis elegans
Exon219480   311   V: 20391927-20392237 Caenorhabditis elegans
Exon219483   109   V: 20392287-20392395 Caenorhabditis elegans
Exon219486   123   V: 20392934-20393056 Caenorhabditis elegans
Exon219489   255   V: 20393113-20393367 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F53H2.1b.1 20389539 20393367 1

1 Sequence

Length
2271

1 Sequence Ontology Term

Identifier Name Description
transcript