WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38H6C.17.1 Sequence Name  Y38H6C.17.1
Length (nt)  1457   Chromosome Location  V: 20540379-20544192
Chromosome . Primary Identifier  V Chromosome Location . Start  20540379
Chromosome Location . End  20544192 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38H6C.17.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012629 slc-36.3 Y38H6C.17 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38H6C.17 Y38H6C.17 1365   V: 20540458-20540575

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38H6C.17.1 20540379 20544192 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon219734   197   V: 20540379-20540575 Caenorhabditis elegans
Exon219735   142   V: 20540659-20540800 Caenorhabditis elegans
Exon219736   179   V: 20540845-20541023 Caenorhabditis elegans
Exon219737   290   V: 20541075-20541364 Caenorhabditis elegans
Exon219738   171   V: 20541829-20541999 Caenorhabditis elegans
Exon219739   85   V: 20542091-20542175 Caenorhabditis elegans
Exon219740   93   V: 20542224-20542316 Caenorhabditis elegans
Exon219741   89   V: 20542365-20542453 Caenorhabditis elegans
Exon219742   91   V: 20543836-20543926 Caenorhabditis elegans
Exon219743   120   V: 20544073-20544192 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38H6C.17.1 20540379 20544192 -1

1 Sequence

Length
1457

1 Sequence Ontology Term

Identifier Name Description
transcript