WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W01F3.1a.1 Sequence Name  W01F3.1a.1
Length (nt)  1856   Chromosome Location  V: 20654652-20659744
Chromosome . Primary Identifier  V Chromosome Location . Start  20654652
Chromosome Location . End  20659744 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W01F3.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012184 mnr-1 W01F3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W01F3.1a W01F3.1a 1593   V: 20654695-20654746

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W01F3.1a.1 20654652 20659744 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon220056   95   V: 20654652-20654746 Caenorhabditis elegans
Exon220057   135   V: 20655831-20655965 Caenorhabditis elegans
Exon220059   162   V: 20656174-20656335 Caenorhabditis elegans
Exon220060   146   V: 20656944-20657089 Caenorhabditis elegans
Exon220062   291   V: 20657138-20657428 Caenorhabditis elegans
Exon220064   120   V: 20657929-20658048 Caenorhabditis elegans
Exon220066   303   V: 20658096-20658398 Caenorhabditis elegans
Exon220068   118   V: 20658605-20658722 Caenorhabditis elegans
Exon220070   112   V: 20659005-20659116 Caenorhabditis elegans
Exon220073   374   V: 20659371-20659744 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W01F3.1a.1 20654652 20659744 1

1 Sequence

Length
1856

1 Sequence Ontology Term

Identifier Name Description
transcript