WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W07A8.2a.2 Sequence Name  W07A8.2a.2
Length (nt)  3270   Chromosome Location  V: 20717869-20728754
Chromosome . Primary Identifier  V Chromosome Location . Start  20717869
Chromosome Location . End  20728754 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W07A8.2a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012319 ipla-3 W07A8.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W07A8.2a W07A8.2a 3072   V: 20718052-20718130

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:W07A8.2a.2 20717869 20728754 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon220255   262   V: 20717869-20718130 Caenorhabditis elegans
Exon220262   80   V: 20718179-20718258 Caenorhabditis elegans
Exon220269   249   V: 20718571-20718819 Caenorhabditis elegans
Exon220277   161   V: 20719507-20719667 Caenorhabditis elegans
Exon220283   119   V: 20719914-20720032 Caenorhabditis elegans
Exon220292   260   V: 20723839-20724098 Caenorhabditis elegans
Exon220298   412   V: 20724571-20724982 Caenorhabditis elegans
Exon220304   110   V: 20725515-20725624 Caenorhabditis elegans
Exon220310   165   V: 20725816-20725980 Caenorhabditis elegans
Exon220316   206   V: 20726155-20726360 Caenorhabditis elegans
Exon220322   239   V: 20726489-20726727 Caenorhabditis elegans
Exon220328   202   V: 20726828-20727029 Caenorhabditis elegans
Exon220334   70   V: 20727082-20727151 Caenorhabditis elegans
Exon220343   115   V: 20727197-20727311 Caenorhabditis elegans
Exon220346   140   V: 20727361-20727500 Caenorhabditis elegans
Exon220352   217   V: 20727549-20727765 Caenorhabditis elegans
Exon220358   154   V: 20727975-20728128 Caenorhabditis elegans
Exon220367   109   V: 20728646-20728754 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:W07A8.2a.2 20717869 20728754 -1

1 Sequence

Length
3270

1 Sequence Ontology Term

Identifier Name Description
transcript