WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W07A8.3d.1 Sequence Name  W07A8.3d.1
Length (nt)  2709   Chromosome Location  V: 20729948-20744346
Chromosome . Primary Identifier  V Chromosome Location . Start  20729948
Chromosome Location . End  20744346 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W07A8.3d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001043 dnj-25 W07A8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W07A8.3d W07A8.3d 2361   V: 20730269-20730412

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:W07A8.3d.1 20729948 20744346 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon220374   465   V: 20729948-20730412 Caenorhabditis elegans
Exon220380   129   V: 20731190-20731318 Caenorhabditis elegans
Exon220384   96   V: 20731618-20731713 Caenorhabditis elegans
Exon220400   92   V: 20736240-20736331 Caenorhabditis elegans
Exon220404   135   V: 20736382-20736516 Caenorhabditis elegans
Exon220408   116   V: 20736560-20736675 Caenorhabditis elegans
Exon220412   332   V: 20737371-20737702 Caenorhabditis elegans
Exon220416   191   V: 20738726-20738916 Caenorhabditis elegans
Exon220420   98   V: 20738963-20739060 Caenorhabditis elegans
Exon220423   131   V: 20739720-20739850 Caenorhabditis elegans
Exon220425   225   V: 20742386-20742610 Caenorhabditis elegans
Exon220427   170   V: 20743355-20743524 Caenorhabditis elegans
Exon220429   61   V: 20743582-20743642 Caenorhabditis elegans
Exon220431   103   V: 20743695-20743797 Caenorhabditis elegans
Exon220433   164   V: 20743852-20744015 Caenorhabditis elegans
Exon220435   129   V: 20744094-20744222 Caenorhabditis elegans
Exon220437   72   V: 20744275-20744346 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:W07A8.3d.1 20729948 20744346 -1

1 Sequence

Length
2709

1 Sequence Ontology Term

Identifier Name Description
transcript