WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F38A6.2a.1 Sequence Name  F38A6.2a.1
Length (nt)  2743   Chromosome Location  V: 20764971-20770161
Chromosome . Primary Identifier  V Chromosome Location . Start  20764971
Chromosome Location . End  20770161 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38A6.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001248 elp-1 F38A6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F38A6.2a F38A6.2a 2676   V: 20765009-20765131

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F38A6.2a.1 20764971 20770161 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon220517   161   V: 20764971-20765131 Caenorhabditis elegans
Exon220519   98   V: 20765536-20765633 Caenorhabditis elegans
Exon220521   265   V: 20765682-20765946 Caenorhabditis elegans
Exon220523   315   V: 20765995-20766309 Caenorhabditis elegans
Exon220525   264   V: 20766358-20766621 Caenorhabditis elegans
Exon220527   123   V: 20766680-20766802 Caenorhabditis elegans
Exon220529   141   V: 20766848-20766988 Caenorhabditis elegans
Exon220531   337   V: 20767036-20767372 Caenorhabditis elegans
Exon220533   151   V: 20767424-20767574 Caenorhabditis elegans
Exon220535   66   V: 20767626-20767691 Caenorhabditis elegans
Exon220537   98   V: 20767740-20767837 Caenorhabditis elegans
Exon220539   81   V: 20767898-20767978 Caenorhabditis elegans
Exon220541   346   V: 20768350-20768695 Caenorhabditis elegans
Exon220543   100   V: 20768749-20768848 Caenorhabditis elegans
Exon220545   86   V: 20768899-20768984 Caenorhabditis elegans
Exon220548   111   V: 20770051-20770161 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F38A6.2a.1 20764971 20770161 -1

1 Sequence

Length
2743

1 Sequence Ontology Term

Identifier Name Description
transcript