WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T03D8.5c.1 Sequence Name  T03D8.5c.1
Length (nt)  3153   Chromosome Location  V: 20820405-20825028
Chromosome . Primary Identifier  V Chromosome Location . Start  20820405
Chromosome Location . End  20825028 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T03D8.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001547 gcy-22 T03D8.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T03D8.5c T03D8.5c 3153   V: 20820405-20820482

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T03D8.5c.1 20820405 20825028 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon220668   78   V: 20820405-20820482 Caenorhabditis elegans
Exon220671   95   V: 20820527-20820621 Caenorhabditis elegans
Exon220674   274   V: 20820675-20820948 Caenorhabditis elegans
Exon220677   193   V: 20821168-20821360 Caenorhabditis elegans
Exon220680   74   V: 20821406-20821479 Caenorhabditis elegans
Exon220683   456   V: 20821527-20821982 Caenorhabditis elegans
Exon220686   261   V: 20822040-20822300 Caenorhabditis elegans
Exon220689   262   V: 20822346-20822607 Caenorhabditis elegans
Exon220692   200   V: 20822655-20822854 Caenorhabditis elegans
Exon220695   134   V: 20822984-20823117 Caenorhabditis elegans
Exon220698   141   V: 20823166-20823306 Caenorhabditis elegans
Exon220701   171   V: 20823352-20823522 Caenorhabditis elegans
Exon220704   123   V: 20823567-20823689 Caenorhabditis elegans
Exon220707   233   V: 20823733-20823965 Caenorhabditis elegans
Exon220710   133   V: 20824017-20824149 Caenorhabditis elegans
Exon220713   107   V: 20824194-20824300 Caenorhabditis elegans
Exon220715   218   V: 20824811-20825028 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T03D8.5c.1 20820405 20825028 -1

1 Sequence

Length
3153

1 Sequence Ontology Term

Identifier Name Description
transcript