WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F25C8.3b.1 Sequence Name  F25C8.3b.1
Length (nt)  10039   Chromosome Location  V: 20879601-20898909
Chromosome . Primary Identifier  V Chromosome Location . Start  20879601
Chromosome Location . End  20898909 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F25C8.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006812 unc-80 F25C8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F25C8.3b F25C8.3b 9615   V: 20879854-20879948

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F25C8.3b.1 20879601 20898909 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

34 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon220787   348   V: 20879601-20879948 Caenorhabditis elegans
Exon220793   75   V: 20880662-20880736 Caenorhabditis elegans
Exon220798   49   V: 20880779-20880827 Caenorhabditis elegans
Exon220803   120   V: 20881241-20881360 Caenorhabditis elegans
Exon220808   132   V: 20881406-20881537 Caenorhabditis elegans
Exon220813   625   V: 20882809-20883433 Caenorhabditis elegans
Exon220818   270   V: 20884253-20884522 Caenorhabditis elegans
Exon220823   159   V: 20884605-20884763 Caenorhabditis elegans
Exon220828   387   V: 20885191-20885577 Caenorhabditis elegans
Exon220833   406   V: 20885622-20886027 Caenorhabditis elegans
Exon220838   224   V: 20886077-20886300 Caenorhabditis elegans
Exon220843   164   V: 20886346-20886509 Caenorhabditis elegans
Exon220848   119   V: 20886583-20886701 Caenorhabditis elegans
Exon220853   419   V: 20887734-20888152 Caenorhabditis elegans
Exon220858   161   V: 20888781-20888941 Caenorhabditis elegans
Exon220863   577   V: 20888994-20889570 Caenorhabditis elegans
Exon220868   102   V: 20889615-20889716 Caenorhabditis elegans
Exon220873   132   V: 20889840-20889971 Caenorhabditis elegans
Exon220877   162   V: 20890252-20890413 Caenorhabditis elegans
Exon220884   337   V: 20890880-20891216 Caenorhabditis elegans
Exon220889   76   V: 20891263-20891338 Caenorhabditis elegans
Exon220897   916   V: 20891718-20892633 Caenorhabditis elegans
Exon220902   239   V: 20893261-20893499 Caenorhabditis elegans
Exon220909   87   V: 20894014-20894100 Caenorhabditis elegans
Exon220914   153   V: 20894147-20894299 Caenorhabditis elegans
Exon220919   402   V: 20894362-20894763 Caenorhabditis elegans
Exon220924   756   V: 20894834-20895589 Caenorhabditis elegans
Exon220929   290   V: 20895674-20895963 Caenorhabditis elegans
Exon220934   682   V: 20896014-20896695 Caenorhabditis elegans
Exon220939   268   V: 20896753-20897020 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F25C8.3b.1 20879601 20898909 1

1 Sequence

Length
10039

1 Sequence Ontology Term

Identifier Name Description
transcript