WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F25C8.3b.1 Sequence Name  F25C8.3b.1
Length (nt)  10039   Chromosome Location  V: 20879601-20898909
Chromosome . Primary Identifier  V Chromosome Location . Start  20879601
Chromosome Location . End  20898909 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F25C8.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006812 unc-80 F25C8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F25C8.3b F25C8.3b 9615   V: 20879854-20879948

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F25C8.3b.1 20879601 20898909 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

34 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon220841   348   V: 20879601-20879948 Caenorhabditis elegans
Exon220847   75   V: 20880662-20880736 Caenorhabditis elegans
Exon220852   49   V: 20880779-20880827 Caenorhabditis elegans
Exon220857   120   V: 20881241-20881360 Caenorhabditis elegans
Exon220862   132   V: 20881406-20881537 Caenorhabditis elegans
Exon220867   625   V: 20882809-20883433 Caenorhabditis elegans
Exon220872   270   V: 20884253-20884522 Caenorhabditis elegans
Exon220877   159   V: 20884605-20884763 Caenorhabditis elegans
Exon220882   387   V: 20885191-20885577 Caenorhabditis elegans
Exon220887   406   V: 20885622-20886027 Caenorhabditis elegans
Exon220892   224   V: 20886077-20886300 Caenorhabditis elegans
Exon220897   164   V: 20886346-20886509 Caenorhabditis elegans
Exon220902   119   V: 20886583-20886701 Caenorhabditis elegans
Exon220907   419   V: 20887734-20888152 Caenorhabditis elegans
Exon220912   161   V: 20888781-20888941 Caenorhabditis elegans
Exon220917   577   V: 20888994-20889570 Caenorhabditis elegans
Exon220922   102   V: 20889615-20889716 Caenorhabditis elegans
Exon220927   132   V: 20889840-20889971 Caenorhabditis elegans
Exon220931   162   V: 20890252-20890413 Caenorhabditis elegans
Exon220938   337   V: 20890880-20891216 Caenorhabditis elegans
Exon220943   76   V: 20891263-20891338 Caenorhabditis elegans
Exon220951   916   V: 20891718-20892633 Caenorhabditis elegans
Exon220956   239   V: 20893261-20893499 Caenorhabditis elegans
Exon220963   87   V: 20894014-20894100 Caenorhabditis elegans
Exon220968   153   V: 20894147-20894299 Caenorhabditis elegans
Exon220973   402   V: 20894362-20894763 Caenorhabditis elegans
Exon220978   756   V: 20894834-20895589 Caenorhabditis elegans
Exon220983   290   V: 20895674-20895963 Caenorhabditis elegans
Exon220988   682   V: 20896014-20896695 Caenorhabditis elegans
Exon220993   268   V: 20896753-20897020 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F25C8.3b.1 20879601 20898909 1

1 Sequence

Length
10039

1 Sequence Ontology Term

Identifier Name Description
transcript