WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F25C8.3a.1 Sequence Name  F25C8.3a.1
Length (nt)  9888   Chromosome Location  V: 20879854-20898948
Chromosome . Primary Identifier  V Chromosome Location . Start  20879854
Chromosome Location . End  20898948 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F25C8.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006812 unc-80 F25C8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F25C8.3a F25C8.3a 9678   V: 20879854-20879948

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F25C8.3a.1 20879854 20898948 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

36 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon220790   95   V: 20879854-20879948 Caenorhabditis elegans
Exon220792   75   V: 20880662-20880736 Caenorhabditis elegans
Exon220797   49   V: 20880779-20880827 Caenorhabditis elegans
Exon220802   120   V: 20881241-20881360 Caenorhabditis elegans
Exon220807   132   V: 20881406-20881537 Caenorhabditis elegans
Exon220812   625   V: 20882809-20883433 Caenorhabditis elegans
Exon220817   270   V: 20884253-20884522 Caenorhabditis elegans
Exon220822   159   V: 20884605-20884763 Caenorhabditis elegans
Exon220827   387   V: 20885191-20885577 Caenorhabditis elegans
Exon220832   406   V: 20885622-20886027 Caenorhabditis elegans
Exon220837   224   V: 20886077-20886300 Caenorhabditis elegans
Exon220842   164   V: 20886346-20886509 Caenorhabditis elegans
Exon220847   119   V: 20886583-20886701 Caenorhabditis elegans
Exon220852   419   V: 20887734-20888152 Caenorhabditis elegans
Exon220857   161   V: 20888781-20888941 Caenorhabditis elegans
Exon220862   577   V: 20888994-20889570 Caenorhabditis elegans
Exon220867   102   V: 20889615-20889716 Caenorhabditis elegans
Exon220872   132   V: 20889840-20889971 Caenorhabditis elegans
Exon220876   162   V: 20890252-20890413 Caenorhabditis elegans
Exon220883   337   V: 20890880-20891216 Caenorhabditis elegans
Exon220888   76   V: 20891263-20891338 Caenorhabditis elegans
Exon220893   27   V: 20891419-20891445 Caenorhabditis elegans
Exon220896   916   V: 20891718-20892633 Caenorhabditis elegans
Exon220901   239   V: 20893261-20893499 Caenorhabditis elegans
Exon220906   36   V: 20893585-20893620 Caenorhabditis elegans
Exon220908   87   V: 20894014-20894100 Caenorhabditis elegans
Exon220913   153   V: 20894147-20894299 Caenorhabditis elegans
Exon220918   402   V: 20894362-20894763 Caenorhabditis elegans
Exon220923   756   V: 20894834-20895589 Caenorhabditis elegans
Exon220928   290   V: 20895674-20895963 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F25C8.3a.1 20879854 20898948 1

1 Sequence

Length
9888

1 Sequence Ontology Term

Identifier Name Description
transcript