WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F25C8.3d.1 Sequence Name  F25C8.3d.1
Length (nt)  9792   Chromosome Location  V: 20879854-20898738
Chromosome . Primary Identifier  V Chromosome Location . Start  20879854
Chromosome Location . End  20898738 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F25C8.3d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006812 unc-80 F25C8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F25C8.3d F25C8.3d 9792   V: 20879854-20879948

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F25C8.3d.1 20879854 20898738 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

37 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon220842   95   V: 20879854-20879948 Caenorhabditis elegans
Exon220849   75   V: 20880662-20880736 Caenorhabditis elegans
Exon220854   49   V: 20880779-20880827 Caenorhabditis elegans
Exon220859   120   V: 20881241-20881360 Caenorhabditis elegans
Exon220864   132   V: 20881406-20881537 Caenorhabditis elegans
Exon220869   625   V: 20882809-20883433 Caenorhabditis elegans
Exon220874   270   V: 20884253-20884522 Caenorhabditis elegans
Exon220879   159   V: 20884605-20884763 Caenorhabditis elegans
Exon220884   387   V: 20885191-20885577 Caenorhabditis elegans
Exon220889   406   V: 20885622-20886027 Caenorhabditis elegans
Exon220894   224   V: 20886077-20886300 Caenorhabditis elegans
Exon220899   164   V: 20886346-20886509 Caenorhabditis elegans
Exon220904   119   V: 20886583-20886701 Caenorhabditis elegans
Exon220909   419   V: 20887734-20888152 Caenorhabditis elegans
Exon220914   161   V: 20888781-20888941 Caenorhabditis elegans
Exon220919   577   V: 20888994-20889570 Caenorhabditis elegans
Exon220924   102   V: 20889615-20889716 Caenorhabditis elegans
Exon220929   132   V: 20889840-20889971 Caenorhabditis elegans
Exon220933   162   V: 20890252-20890413 Caenorhabditis elegans
Exon220935   114   V: 20890505-20890618 Caenorhabditis elegans
Exon220940   337   V: 20890880-20891216 Caenorhabditis elegans
Exon220945   76   V: 20891263-20891338 Caenorhabditis elegans
Exon220949   27   V: 20891419-20891445 Caenorhabditis elegans
Exon220953   916   V: 20891718-20892633 Caenorhabditis elegans
Exon220958   239   V: 20893261-20893499 Caenorhabditis elegans
Exon220961   36   V: 20893585-20893620 Caenorhabditis elegans
Exon220965   87   V: 20894014-20894100 Caenorhabditis elegans
Exon220970   153   V: 20894147-20894299 Caenorhabditis elegans
Exon220975   402   V: 20894362-20894763 Caenorhabditis elegans
Exon220980   756   V: 20894834-20895589 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F25C8.3d.1 20879854 20898738 1

1 Sequence

Length
9792

1 Sequence Ontology Term

Identifier Name Description
transcript