WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F25C8.3e.1 Sequence Name  F25C8.3e.1
Length (nt)  9654   Chromosome Location  V: 20879854-20898909
Chromosome . Primary Identifier  V Chromosome Location . Start  20879854
Chromosome Location . End  20898909 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F25C8.3e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006812 unc-80 F25C8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F25C8.3e F25C8.3e 9483   V: 20879854-20879948

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F25C8.3e.1 20879854 20898909 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

33 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon220843   95   V: 20879854-20879948 Caenorhabditis elegans
Exon220850   75   V: 20880662-20880736 Caenorhabditis elegans
Exon220855   49   V: 20880779-20880827 Caenorhabditis elegans
Exon220860   120   V: 20881241-20881360 Caenorhabditis elegans
Exon220865   132   V: 20881406-20881537 Caenorhabditis elegans
Exon220870   625   V: 20882809-20883433 Caenorhabditis elegans
Exon220875   270   V: 20884253-20884522 Caenorhabditis elegans
Exon220880   159   V: 20884605-20884763 Caenorhabditis elegans
Exon220885   387   V: 20885191-20885577 Caenorhabditis elegans
Exon220890   406   V: 20885622-20886027 Caenorhabditis elegans
Exon220895   224   V: 20886077-20886300 Caenorhabditis elegans
Exon220900   164   V: 20886346-20886509 Caenorhabditis elegans
Exon220905   119   V: 20886583-20886701 Caenorhabditis elegans
Exon220910   419   V: 20887734-20888152 Caenorhabditis elegans
Exon220915   161   V: 20888781-20888941 Caenorhabditis elegans
Exon220920   577   V: 20888994-20889570 Caenorhabditis elegans
Exon220925   102   V: 20889615-20889716 Caenorhabditis elegans
Exon220934   162   V: 20890252-20890413 Caenorhabditis elegans
Exon220941   337   V: 20890880-20891216 Caenorhabditis elegans
Exon220946   76   V: 20891263-20891338 Caenorhabditis elegans
Exon220954   916   V: 20891718-20892633 Caenorhabditis elegans
Exon220959   239   V: 20893261-20893499 Caenorhabditis elegans
Exon220966   87   V: 20894014-20894100 Caenorhabditis elegans
Exon220971   153   V: 20894147-20894299 Caenorhabditis elegans
Exon220976   402   V: 20894362-20894763 Caenorhabditis elegans
Exon220981   756   V: 20894834-20895589 Caenorhabditis elegans
Exon220986   290   V: 20895674-20895963 Caenorhabditis elegans
Exon220991   682   V: 20896014-20896695 Caenorhabditis elegans
Exon220996   268   V: 20896753-20897020 Caenorhabditis elegans
Exon221001   293   V: 20897076-20897368 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F25C8.3e.1 20879854 20898909 1

1 Sequence

Length
9654

1 Sequence Ontology Term

Identifier Name Description
transcript