WormMine: Gene WBGene00023391

• WormBase Gene ID: WBGene00023391
• Gene Name: Y73B3A.t1
• Sequence Name: Y73B3A.t1
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including fust-1; xpf-1; and ins-11 based on RNA-seq studies. Is affected by multi-walled carbon nanotube based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 72

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00023391

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

9 Allele

• gk962800
• gk964321
• WBVar02121813
• gk964514
• gk964075
• gk629203
• gk704200
• gk327093
• gk628464

1 Chromosome

• WormBase ID: X
• Organism: Caenorhabditis elegans
• Length (nt): 17718942

1 Chromosome Location

• Feature . Primary Identifier: WBGene00023391
• Start: 86887
• End: 86958
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that did not alter expression in smg-1(r910) and smg-1(r910) smg-2(r915) mutants comparing to in N2, but their mRNAs co-purify with SMG-2.	edgeR	WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
	Transcripts that showed significantly increased expression in tdp-1(csb38) comparing to in N2 at L4 larva stage.	DESeq2(1.36.0), fold change > 2, FDR < 0.05.	WBPaper00066004:tdp-1(csb38)_upregulated
	Transcripts that showed significantly increased expression in ins-11(tm1053) young adult animals comparing to in N2.	For log2 fold changes > 0.00001 the values > 81.25th percentile were defined as up-regulated and for log2 fold changes < -0.00001 the values < 18. 75th percentile were defined as down-regulated.	WBPaper00053664:ins-11(tm1053)_upregulated
	Genes that showed significantly increased expression after exposure to 1mg/L MWCNTs from L1 larva to young adult.	Transcripts with false discovery rate-corrected p-values < 0.05 and fold change > 2 were defined as differentially expressed.	WBPaper00049377:MWCNT_upregulated
	Transcripts that showed significantly decreased expression in xpf-1(tm2842) comparing to in N2 animals.	DESeq2 1.14.1, fold change > 2, FDR < 0.01.	WBPaper00062497:xpf-1(tm2842)_downregulated
	Transcripts that showed significantly increased expression in fust-1(csb21) comparing to in N2 at L4 larva stage.	DESeq2(1.36.0), fold change > 2, FDR < 0.05.	WBPaper00066004:fust-1(csb21)_upregulated
	Transcripts that showed significantly increased expression in ceh-14(ch3) comparing to in N2 at L4 larva stage.	DESeq2(1.36.0), fold change > 2, FDR < 0.05.	WBPaper00066004:ceh-14(ch3)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00023391
• Start: 86887
• End: 86958
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 72

1 Sequence Ontology Term