WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52D1.3a.1 Sequence Name  F52D1.3a.1
Length (nt)  2583   Chromosome Location  X: 450446-457471
Chromosome . Primary Identifier  X Chromosome Location . Start  450446
Chromosome Location . End  457471 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52D1.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004127 abu-12 F52D1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52D1.3a F52D1.3a 2325   X: 450650-450703

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52D1.3a.1 450446 457471 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon221764   258   X: 450446-450703 Caenorhabditis elegans
Exon221767   235   X: 450755-450989 Caenorhabditis elegans
Exon221770   476   X: 451647-452122 Caenorhabditis elegans
Exon221773   138   X: 452367-452504 Caenorhabditis elegans
Exon221776   66   X: 452564-452629 Caenorhabditis elegans
Exon221779   210   X: 452673-452882 Caenorhabditis elegans
Exon221782   219   X: 453977-454195 Caenorhabditis elegans
Exon221784   195   X: 454288-454482 Caenorhabditis elegans
Exon221787   117   X: 455464-455580 Caenorhabditis elegans
Exon221790   293   X: 455631-455923 Caenorhabditis elegans
Exon221793   117   X: 455975-456091 Caenorhabditis elegans
Exon221796   96   X: 456137-456232 Caenorhabditis elegans
Exon221799   163   X: 457309-457471 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52D1.3a.1 450446 457471 -1

1 Sequence

Length
2583

1 Sequence Ontology Term

Identifier Name Description
transcript