WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52D1.3b.1 Sequence Name  F52D1.3b.1
Length (nt)  2870   Chromosome Location  X: 450448-457610
Chromosome . Primary Identifier  X Chromosome Location . Start  450448
Chromosome Location . End  457610 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52D1.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004127 abu-12 F52D1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52D1.3b F52D1.3b 2475   X: 450650-450703

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52D1.3b.1 450448 457610 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon221766   256   X: 450448-450703 Caenorhabditis elegans
Exon221768   235   X: 450755-450989 Caenorhabditis elegans
Exon221771   476   X: 451647-452122 Caenorhabditis elegans
Exon221774   138   X: 452367-452504 Caenorhabditis elegans
Exon221777   66   X: 452564-452629 Caenorhabditis elegans
Exon221781   360   X: 452673-453032 Caenorhabditis elegans
Exon221783   219   X: 453977-454195 Caenorhabditis elegans
Exon221785   195   X: 454288-454482 Caenorhabditis elegans
Exon221788   117   X: 455464-455580 Caenorhabditis elegans
Exon221791   293   X: 455631-455923 Caenorhabditis elegans
Exon221794   117   X: 455975-456091 Caenorhabditis elegans
Exon221797   96   X: 456137-456232 Caenorhabditis elegans
Exon221800   302   X: 457309-457610 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52D1.3b.1 450448 457610 -1

1 Sequence

Length
2870

1 Sequence Ontology Term

Identifier Name Description
transcript