WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F57C12.5c.1 Sequence Name  F57C12.5c.1
Length (nt)  4845   Chromosome Location  X: 576318-587485
Chromosome . Primary Identifier  X Chromosome Location . Start  576318
Chromosome Location . End  587485 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57C12.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003407 mrp-1 F57C12.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57C12.5c F57C12.5c 4605   X: 576487-576615

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F57C12.5c.1 576318 587485 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon221984   298   X: 576318-576615 Caenorhabditis elegans
Exon221990   178   X: 576667-576844 Caenorhabditis elegans
Exon221995   109   X: 578102-578210 Caenorhabditis elegans
Exon222000   460   X: 578257-578716 Caenorhabditis elegans
Exon222005   133   X: 578958-579090 Caenorhabditis elegans
Exon222010   122   X: 579138-579259 Caenorhabditis elegans
Exon222015   78   X: 579310-579387 Caenorhabditis elegans
Exon222021   156   X: 580298-580453 Caenorhabditis elegans
Exon222025   155   X: 581630-581784 Caenorhabditis elegans
Exon222030   510   X: 582173-582682 Caenorhabditis elegans
Exon222035   228   X: 582738-582965 Caenorhabditis elegans
Exon222040   142   X: 583011-583152 Caenorhabditis elegans
Exon222045   374   X: 583195-583568 Caenorhabditis elegans
Exon222050   235   X: 583636-583870 Caenorhabditis elegans
Exon222055   327   X: 583916-584242 Caenorhabditis elegans
Exon222060   660   X: 584287-584946 Caenorhabditis elegans
Exon222065   257   X: 585620-585876 Caenorhabditis elegans
Exon222070   124   X: 585925-586048 Caenorhabditis elegans
Exon222075   183   X: 586205-586387 Caenorhabditis elegans
Exon222080   116   X: 587370-587485 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F57C12.5c.1 576318 587485 -1

1 Sequence

Length
4845

1 Sequence Ontology Term

Identifier Name Description
transcript