WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F57C12.5e.1 Sequence Name  F57C12.5e.1
Length (nt)  4853   Chromosome Location  X: 576320-587495
Chromosome . Primary Identifier  X Chromosome Location . Start  576320
Chromosome Location . End  587495 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57C12.5e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003407 mrp-1 F57C12.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57C12.5e F57C12.5e 4605   X: 576487-576615

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F57C12.5e.1 576320 587495 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon221987   296   X: 576320-576615 Caenorhabditis elegans
Exon221992   178   X: 576667-576844 Caenorhabditis elegans
Exon221997   109   X: 578102-578210 Caenorhabditis elegans
Exon222002   460   X: 578257-578716 Caenorhabditis elegans
Exon222007   133   X: 578958-579090 Caenorhabditis elegans
Exon222012   122   X: 579138-579259 Caenorhabditis elegans
Exon222017   78   X: 579310-579387 Caenorhabditis elegans
Exon222022   156   X: 580889-581044 Caenorhabditis elegans
Exon222027   155   X: 581630-581784 Caenorhabditis elegans
Exon222032   510   X: 582173-582682 Caenorhabditis elegans
Exon222037   228   X: 582738-582965 Caenorhabditis elegans
Exon222042   142   X: 583011-583152 Caenorhabditis elegans
Exon222047   374   X: 583195-583568 Caenorhabditis elegans
Exon222052   235   X: 583636-583870 Caenorhabditis elegans
Exon222057   327   X: 583916-584242 Caenorhabditis elegans
Exon222062   660   X: 584287-584946 Caenorhabditis elegans
Exon222067   257   X: 585620-585876 Caenorhabditis elegans
Exon222072   124   X: 585925-586048 Caenorhabditis elegans
Exon222077   183   X: 586205-586387 Caenorhabditis elegans
Exon222082   126   X: 587370-587495 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F57C12.5e.1 576320 587495 -1

1 Sequence

Length
4853

1 Sequence Ontology Term

Identifier Name Description
transcript