WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M6.1b.1 Sequence Name  M6.1b.1
Length (nt)  3859   Chromosome Location  X: 642156-650107
Chromosome . Primary Identifier  X Chromosome Location . Start  642156
Chromosome Location . End  650107 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M6.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002056 ifc-2 M6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M6.1b M6.1b 3786   X: 642214-642243

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:M6.1b.1 642156 650107 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon222152   88   X: 642156-642243 Caenorhabditis elegans
Exon222155   111   X: 642291-642401 Caenorhabditis elegans
Exon222158   84   X: 642529-642612 Caenorhabditis elegans
Exon222161   72   X: 642672-642743 Caenorhabditis elegans
Exon222164   110   X: 642795-642904 Caenorhabditis elegans
Exon222170   325   X: 643729-644053 Caenorhabditis elegans
Exon222175   159   X: 644102-644260 Caenorhabditis elegans
Exon222181   168   X: 644309-644476 Caenorhabditis elegans
Exon222187   495   X: 644528-645022 Caenorhabditis elegans
Exon222193   111   X: 645109-645219 Caenorhabditis elegans
Exon222199   164   X: 645469-645632 Caenorhabditis elegans
Exon222206   103   X: 646206-646308 Caenorhabditis elegans
Exon222210   660   X: 646358-647017 Caenorhabditis elegans
Exon222215   92   X: 647287-647378 Caenorhabditis elegans
Exon222220   253   X: 647475-647727 Caenorhabditis elegans
Exon222225   119   X: 647773-647891 Caenorhabditis elegans
Exon222230   200   X: 648351-648550 Caenorhabditis elegans
Exon222235   217   X: 648789-649005 Caenorhabditis elegans
Exon222240   111   X: 649055-649165 Caenorhabditis elegans
Exon222245   136   X: 649372-649507 Caenorhabditis elegans
Exon222251   81   X: 650027-650107 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:M6.1b.1 642156 650107 -1

1 Sequence

Length
3859

1 Sequence Ontology Term

Identifier Name Description
transcript