WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M6.1d.1 Sequence Name  M6.1d.1
Length (nt)  1979   Chromosome Location  X: 642156-645724
Chromosome . Primary Identifier  X Chromosome Location . Start  642156
Chromosome Location . End  645724 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M6.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002056 ifc-2 M6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M6.1d M6.1d 1869   X: 642214-642243

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M6.1d.1 642156 645724 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon222153   88   X: 642156-642243 Caenorhabditis elegans
Exon222156   111   X: 642291-642401 Caenorhabditis elegans
Exon222159   84   X: 642529-642612 Caenorhabditis elegans
Exon222162   72   X: 642672-642743 Caenorhabditis elegans
Exon222165   110   X: 642795-642904 Caenorhabditis elegans
Exon222171   325   X: 643729-644053 Caenorhabditis elegans
Exon222176   159   X: 644102-644260 Caenorhabditis elegans
Exon222182   168   X: 644309-644476 Caenorhabditis elegans
Exon222188   495   X: 644528-645022 Caenorhabditis elegans
Exon222194   111   X: 645109-645219 Caenorhabditis elegans
Exon222202   256   X: 645469-645724 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M6.1d.1 642156 645724 -1

1 Sequence

Length
1979

1 Sequence Ontology Term

Identifier Name Description
transcript