WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M6.1e.1 Sequence Name  M6.1e.1
Length (nt)  4020   Chromosome Location  X: 642214-654821
Chromosome . Primary Identifier  X Chromosome Location . Start  642214
Chromosome Location . End  654821 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M6.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002056 ifc-2 M6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M6.1e M6.1e 4020   X: 642214-642243

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:M6.1e.1 642214 654821 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon222154   30   X: 642214-642243 Caenorhabditis elegans
Exon222157   111   X: 642291-642401 Caenorhabditis elegans
Exon222160   84   X: 642529-642612 Caenorhabditis elegans
Exon222163   72   X: 642672-642743 Caenorhabditis elegans
Exon222166   110   X: 642795-642904 Caenorhabditis elegans
Exon222172   325   X: 643729-644053 Caenorhabditis elegans
Exon222177   159   X: 644102-644260 Caenorhabditis elegans
Exon222183   168   X: 644309-644476 Caenorhabditis elegans
Exon222189   495   X: 644528-645022 Caenorhabditis elegans
Exon222195   111   X: 645109-645219 Caenorhabditis elegans
Exon222200   164   X: 645469-645632 Caenorhabditis elegans
Exon222207   103   X: 646206-646308 Caenorhabditis elegans
Exon222212   660   X: 646358-647017 Caenorhabditis elegans
Exon222217   92   X: 647287-647378 Caenorhabditis elegans
Exon222222   253   X: 647475-647727 Caenorhabditis elegans
Exon222227   119   X: 647773-647891 Caenorhabditis elegans
Exon222232   200   X: 648351-648550 Caenorhabditis elegans
Exon222237   217   X: 648789-649005 Caenorhabditis elegans
Exon222242   111   X: 649055-649165 Caenorhabditis elegans
Exon222247   136   X: 649372-649507 Caenorhabditis elegans
Exon222250   80   X: 650027-650106 Caenorhabditis elegans
Exon222256   85   X: 652049-652133 Caenorhabditis elegans
Exon222258   103   X: 652980-653082 Caenorhabditis elegans
Exon222259   32   X: 654790-654821 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:M6.1e.1 642214 654821 -1

1 Sequence

Length
4020

1 Sequence Ontology Term

Identifier Name Description
transcript