WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F39H12.4.1 Sequence Name  F39H12.4.1
Length (nt)  3414   Chromosome Location  X: 845731-851521
Chromosome . Primary Identifier  X Chromosome Location . Start  845731
Chromosome Location . End  851521 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F39H12.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018215 igcm-1 F39H12.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F39H12.4 F39H12.4 3222   X: 845903-845988

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F39H12.4.1 845731 851521 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon222861   258   X: 845731-845988 Caenorhabditis elegans
Exon222862   98   X: 846462-846559 Caenorhabditis elegans
Exon222863   111   X: 846602-846712 Caenorhabditis elegans
Exon222864   136   X: 846763-846898 Caenorhabditis elegans
Exon222865   181   X: 846951-847131 Caenorhabditis elegans
Exon222866   216   X: 847276-847491 Caenorhabditis elegans
Exon222867   858   X: 847712-848569 Caenorhabditis elegans
Exon222868   156   X: 848619-848774 Caenorhabditis elegans
Exon222869   223   X: 848823-849045 Caenorhabditis elegans
Exon222870   143   X: 849093-849235 Caenorhabditis elegans
Exon222871   397   X: 849370-849766 Caenorhabditis elegans
Exon222872   84   X: 849842-849925 Caenorhabditis elegans
Exon222873   112   X: 849973-850084 Caenorhabditis elegans
Exon222874   200   X: 850886-851085 Caenorhabditis elegans
Exon222875   157   X: 851231-851387 Caenorhabditis elegans
Exon222876   84   X: 851438-851521 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F39H12.4.1 845731 851521 -1

1 Sequence

Length
3414

1 Sequence Ontology Term

Identifier Name Description
transcript