WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09E10.2a.1 Sequence Name  C09E10.2a.1
Length (nt)  3726   Chromosome Location  X: 983905-991456
Chromosome . Primary Identifier  X Chromosome Location . Start  983905
Chromosome Location . End  991456 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09E10.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000958 dgk-1 C09E10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09E10.2a C09E10.2a 2853   X: 984635-984838

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C09E10.2a.1 983905 991456 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223217   934   X: 983905-984838 Caenorhabditis elegans
Exon223221   99   X: 985192-985290 Caenorhabditis elegans
Exon223226   84   X: 985338-985421 Caenorhabditis elegans
Exon223231   147   X: 985827-985973 Caenorhabditis elegans
Exon223236   126   X: 986020-986145 Caenorhabditis elegans
Exon223241   333   X: 986190-986522 Caenorhabditis elegans
Exon223246   410   X: 987240-987649 Caenorhabditis elegans
Exon223251   148   X: 987701-987848 Caenorhabditis elegans
Exon223256   344   X: 988216-988559 Caenorhabditis elegans
Exon223259   124   X: 988609-988732 Caenorhabditis elegans
Exon223262   119   X: 988933-989051 Caenorhabditis elegans
Exon223269   154   X: 989487-989640 Caenorhabditis elegans
Exon223271   132   X: 989686-989817 Caenorhabditis elegans
Exon223276   89   X: 990314-990402 Caenorhabditis elegans
Exon223281   183   X: 990456-990638 Caenorhabditis elegans
Exon223286   157   X: 991079-991235 Caenorhabditis elegans
Exon223291   143   X: 991314-991456 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C09E10.2a.1 983905 991456 -1

1 Sequence

Length
3726

1 Sequence Ontology Term

Identifier Name Description
transcript