WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09E10.2c.1 Sequence Name  C09E10.2c.1
Length (nt)  2385   Chromosome Location  X: 984635-991235
Chromosome . Primary Identifier  X Chromosome Location . Start  984635
Chromosome Location . End  991235 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09E10.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000958 dgk-1 C09E10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09E10.2c C09E10.2c 2385   X: 984635-984838

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09E10.2c.1 984635 991235 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223218   204   X: 984635-984838 Caenorhabditis elegans
Exon223223   99   X: 985192-985290 Caenorhabditis elegans
Exon223228   84   X: 985338-985421 Caenorhabditis elegans
Exon223233   147   X: 985827-985973 Caenorhabditis elegans
Exon223238   126   X: 986020-986145 Caenorhabditis elegans
Exon223243   333   X: 986190-986522 Caenorhabditis elegans
Exon223248   410   X: 987240-987649 Caenorhabditis elegans
Exon223253   148   X: 987701-987848 Caenorhabditis elegans
Exon223264   119   X: 988933-989051 Caenorhabditis elegans
Exon223270   154   X: 989487-989640 Caenorhabditis elegans
Exon223273   132   X: 989686-989817 Caenorhabditis elegans
Exon223278   89   X: 990314-990402 Caenorhabditis elegans
Exon223283   183   X: 990456-990638 Caenorhabditis elegans
Exon223288   157   X: 991079-991235 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09E10.2c.1 984635 991235 -1

1 Sequence

Length
2385

1 Sequence Ontology Term

Identifier Name Description
transcript