WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F55A4.5.1 Sequence Name  F55A4.5.1
Length (nt)  2687   Chromosome Location  X: 1027668-1035286
Chromosome . Primary Identifier  X Chromosome Location . Start  1027668
Chromosome Location . End  1035286 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F55A4.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018857 stau-1 F55A4.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F55A4.5 F55A4.5 2118   X: 1028137-1028235

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F55A4.5.1 1027668 1035286 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223330   568   X: 1027668-1028235 Caenorhabditis elegans
Exon223331   134   X: 1028378-1028511 Caenorhabditis elegans
Exon223332   186   X: 1028590-1028775 Caenorhabditis elegans
Exon223333   134   X: 1029021-1029154 Caenorhabditis elegans
Exon223334   466   X: 1029369-1029834 Caenorhabditis elegans
Exon223335   403   X: 1030505-1030907 Caenorhabditis elegans
Exon223336   218   X: 1030955-1031172 Caenorhabditis elegans
Exon223339   108   X: 1034047-1034154 Caenorhabditis elegans
Exon223340   115   X: 1034202-1034316 Caenorhabditis elegans
Exon223341   138   X: 1034367-1034504 Caenorhabditis elegans
Exon223342   217   X: 1035070-1035286 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F55A4.5.1 1027668 1035286 -1

1 Sequence

Length
2687

1 Sequence Ontology Term

Identifier Name Description
transcript