WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F55A4.8b.1 Sequence Name  F55A4.8b.1
Length (nt)  1751   Chromosome Location  X: 1038514-1044404
Chromosome . Primary Identifier  X Chromosome Location . Start  1038514
Chromosome Location . End  1044404 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F55A4.8b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018860 vpat-1 F55A4.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F55A4.8b F55A4.8b 1461   X: 1038692-1038739

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F55A4.8b.1 1038514 1044404 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223354   226   X: 1038514-1038739 Caenorhabditis elegans
Exon223358   94   X: 1038809-1038902 Caenorhabditis elegans
Exon223361   75   X: 1038957-1039031 Caenorhabditis elegans
Exon223365   96   X: 1039755-1039850 Caenorhabditis elegans
Exon223367   197   X: 1039900-1040096 Caenorhabditis elegans
Exon223370   140   X: 1040157-1040296 Caenorhabditis elegans
Exon223373   160   X: 1040565-1040724 Caenorhabditis elegans
Exon223376   148   X: 1040772-1040919 Caenorhabditis elegans
Exon223379   74   X: 1041059-1041132 Caenorhabditis elegans
Exon223382   219   X: 1041187-1041405 Caenorhabditis elegans
Exon223385   40   X: 1041453-1041492 Caenorhabditis elegans
Exon223388   159   X: 1041688-1041846 Caenorhabditis elegans
Exon223391   123   X: 1044282-1044404 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F55A4.8b.1 1038514 1044404 -1

1 Sequence

Length
1751

1 Sequence Ontology Term

Identifier Name Description
transcript