WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F55A4.8d.1 Sequence Name  F55A4.8d.1
Length (nt)  1248   Chromosome Location  X: 1039751-1044292
Chromosome . Primary Identifier  X Chromosome Location . Start  1039751
Chromosome Location . End  1044292 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F55A4.8d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018860 vpat-1 F55A4.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F55A4.8d F55A4.8d 1248   X: 1039751-1039850

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F55A4.8d.1 1039751 1044292 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223363   100   X: 1039751-1039850 Caenorhabditis elegans
Exon223368   197   X: 1039900-1040096 Caenorhabditis elegans
Exon223371   140   X: 1040157-1040296 Caenorhabditis elegans
Exon223374   160   X: 1040565-1040724 Caenorhabditis elegans
Exon223377   148   X: 1040772-1040919 Caenorhabditis elegans
Exon223380   74   X: 1041059-1041132 Caenorhabditis elegans
Exon223383   219   X: 1041187-1041405 Caenorhabditis elegans
Exon223386   40   X: 1041453-1041492 Caenorhabditis elegans
Exon223389   159   X: 1041688-1041846 Caenorhabditis elegans
Exon223390   11   X: 1044282-1044292 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F55A4.8d.1 1039751 1044292 -1

1 Sequence

Length
1248

1 Sequence Ontology Term

Identifier Name Description
transcript