WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E7.1a.1 Sequence Name  F49E7.1a.1
Length (nt)  3424   Chromosome Location  X: 1097152-1103320
Chromosome . Primary Identifier  X Chromosome Location . Start  1097152
Chromosome Location . End  1103320 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E7.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004377 rme-6 F49E7.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E7.1a F49E7.1a 3282   X: 1097156-1097257

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E7.1a.1 1097152 1103320 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223494   106   X: 1097152-1097257 Caenorhabditis elegans
Exon223496   87   X: 1097313-1097399 Caenorhabditis elegans
Exon223497   98   X: 1097444-1097541 Caenorhabditis elegans
Exon223499   103   X: 1097899-1098001 Caenorhabditis elegans
Exon223501   303   X: 1098045-1098347 Caenorhabditis elegans
Exon223503   109   X: 1098643-1098751 Caenorhabditis elegans
Exon223505   317   X: 1098804-1099120 Caenorhabditis elegans
Exon223508   156   X: 1099169-1099324 Caenorhabditis elegans
Exon223511   169   X: 1099654-1099822 Caenorhabditis elegans
Exon223515   435   X: 1099871-1100305 Caenorhabditis elegans
Exon223518   292   X: 1100618-1100909 Caenorhabditis elegans
Exon223522   228   X: 1100956-1101183 Caenorhabditis elegans
Exon223526   135   X: 1101472-1101606 Caenorhabditis elegans
Exon223530   226   X: 1101658-1101883 Caenorhabditis elegans
Exon223534   116   X: 1101931-1102046 Caenorhabditis elegans
Exon223538   73   X: 1102501-1102573 Caenorhabditis elegans
Exon223542   198   X: 1102649-1102846 Caenorhabditis elegans
Exon223548   273   X: 1103048-1103320 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E7.1a.1 1097152 1103320 1

1 Sequence

Length
3424

1 Sequence Ontology Term

Identifier Name Description
transcript