WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E7.1b.1 Sequence Name  F49E7.1b.1
Length (nt)  3313   Chromosome Location  X: 1097311-1103313
Chromosome . Primary Identifier  X Chromosome Location . Start  1097311
Chromosome Location . End  1103313 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E7.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004377 rme-6 F49E7.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E7.1b F49E7.1b 285   X: 1102697-1102846

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E7.1b.1 1097311 1103313 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223475   89   X: 1097311-1097399 Caenorhabditis elegans
Exon223478   98   X: 1097444-1097541 Caenorhabditis elegans
Exon223480   103   X: 1097899-1098001 Caenorhabditis elegans
Exon223482   303   X: 1098045-1098347 Caenorhabditis elegans
Exon223484   109   X: 1098643-1098751 Caenorhabditis elegans
Exon223486   317   X: 1098804-1099120 Caenorhabditis elegans
Exon223489   156   X: 1099169-1099324 Caenorhabditis elegans
Exon223492   169   X: 1099654-1099822 Caenorhabditis elegans
Exon223496   435   X: 1099871-1100305 Caenorhabditis elegans
Exon223499   292   X: 1100618-1100909 Caenorhabditis elegans
Exon223503   228   X: 1100956-1101183 Caenorhabditis elegans
Exon223507   135   X: 1101472-1101606 Caenorhabditis elegans
Exon223511   226   X: 1101658-1101883 Caenorhabditis elegans
Exon223515   116   X: 1101931-1102046 Caenorhabditis elegans
Exon223519   73   X: 1102501-1102573 Caenorhabditis elegans
Exon223523   198   X: 1102649-1102846 Caenorhabditis elegans
Exon223525   266   X: 1103048-1103313 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E7.1b.1 1097311 1103313 1

1 Sequence

Length
3313

1 Sequence Ontology Term

Identifier Name Description
transcript