WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46H3.2b.1 Sequence Name  C46H3.2b.1
Length (nt)  2196   Chromosome Location  X: 1211760-1219264
Chromosome . Primary Identifier  X Chromosome Location . Start  1211760
Chromosome Location . End  1219264 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46H3.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016725 C46H3.2 C46H3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46H3.2b C46H3.2b 1734   X: 1211968-1212061

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C46H3.2b.1 1211760 1219264 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223760   302   X: 1211760-1212061 Caenorhabditis elegans
Exon223764   78   X: 1212344-1212421 Caenorhabditis elegans
Exon223767   118   X: 1212555-1212672 Caenorhabditis elegans
Exon223770   457   X: 1213050-1213506 Caenorhabditis elegans
Exon223773   302   X: 1214007-1214308 Caenorhabditis elegans
Exon223776   289   X: 1214641-1214929 Caenorhabditis elegans
Exon223780   119   X: 1215274-1215392 Caenorhabditis elegans
Exon223782   89   X: 1217948-1218036 Caenorhabditis elegans
Exon223784   79   X: 1218084-1218162 Caenorhabditis elegans
Exon223786   117   X: 1218411-1218527 Caenorhabditis elegans
Exon223788   154   X: 1218909-1219062 Caenorhabditis elegans
Exon223790   92   X: 1219173-1219264 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C46H3.2b.1 1211760 1219264 -1

1 Sequence

Length
2196

1 Sequence Ontology Term

Identifier Name Description
transcript