WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H42K12.1b.1 Sequence Name  H42K12.1b.1
Length (nt)  2422   Chromosome Location  X: 1321344-1327985
Chromosome . Primary Identifier  X Chromosome Location . Start  1321344
Chromosome Location . End  1327985 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H42K12.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003965 pdk-1 H42K12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H42K12.1b H42K12.1b 1911   X: 1321363-1321449

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H42K12.1b.1 1321344 1327985 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223895   106   X: 1321344-1321449 Caenorhabditis elegans
Exon223898   159   X: 1322173-1322331 Caenorhabditis elegans
Exon223900   196   X: 1324383-1324578 Caenorhabditis elegans
Exon223902   333   X: 1324696-1325028 Caenorhabditis elegans
Exon223903   94   X: 1325069-1325162 Caenorhabditis elegans
Exon223906   166   X: 1325212-1325377 Caenorhabditis elegans
Exon223908   242   X: 1325429-1325670 Caenorhabditis elegans
Exon223909   57   X: 1326073-1326129 Caenorhabditis elegans
Exon223912   289   X: 1326180-1326468 Caenorhabditis elegans
Exon223914   168   X: 1326540-1326707 Caenorhabditis elegans
Exon223915   612   X: 1327374-1327985 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H42K12.1b.1 1321344 1327985 1

1 Sequence

Length
2422

1 Sequence Ontology Term

Identifier Name Description
transcript