WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219245 Gene Name  mir-2221
Sequence Name  ? F56C3.13 Organism  Caenorhabditis elegans
Automated Description  Is affected by alg-1; alg-5; and hrpk-1 based on RNA-seq studies. Biotype  SO:0001265
Genetic Position  X :-18.1821± Length (nt)  ? 118
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219245

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F56C3.13b F56C3.13b 22   X: 1390918-1390939
 

Other

0 CDSs

0 RNAi Result

5 Allele

Public Name
gk963725
tm11266
gk535279
gk688944
gk589049

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219245 1390847 1390964 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_1390965..1391799   835 X: 1390965-1391799 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Fasting for 48 hours, from 3 days post L4 to 5 days post L4. MicroRNAs that showed significantly decreased expression after 48 hours of fasting p < 0.0002, Fishers exact test. WBPaper00051247:fasting_downregulated
  Micro RNAs that showed significantly decreased expression in hrpk-1(tm5522) comparing to in N2 at L4 larva stage. DESeq, fold change > 2, p-value <= 0.05. WBPaper00058673:hrpk-1(tm5522)_downregulated_miRNA_L4
  MicroRNAs that showed significantly increased expression in alg-5(ram2), comparing to in N2. DESeq2, Fold change > 1.5. WBPaper00051404:alg-5(ram2)_upregulated_miRNA
  MicroRNAs that showed significantly increased expression in alg-5(tm1163), comparing to in N2. DESeq2, Fold change > 1.5. WBPaper00051404:alg-5(tm1163)_upregulated_miRNA
  MicroRNAs that showed significantly increased expression in alg-1(gk214), comparing to in N2. DESeq2, Fold change > 1.5. WBPaper00051404:alg-1(gk214)_upregulated_miRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219245 1390847 1390964 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
118

1 Sequence Ontology Term